API for motifmatchr
Fast Motif Matching in R
| Global functions | |
|---|---|
| .onUnload | Source code |
| check_bg | Source code |
| convert_pwm | Source code |
| convert_pwms | Source code |
| example_motifs | Man page |
| get_bg | Source code |
| get_motif_ix | Source code |
| get_motif_ix_plus | Source code |
| get_motif_positions | Source code |
| get_thresholds | Source code |
| matchMotifs | Man page |
| matchMotifs,PFMatrix,ANY-method | Man page |
| matchMotifs,PFMatrixList,ANY-method | Man page |
| matchMotifs,PWMatrix,ANY-method | Man page |
| matchMotifs,PWMatrixList,BSgenomeViews-method | Man page |
| matchMotifs,PWMatrixList,DNAString-method | Man page |
| matchMotifs,PWMatrixList,DNAStringSet-method | Man page |
| matchMotifs,PWMatrixList,GenomicRanges-method | Man page |
| matchMotifs,PWMatrixList,RangedSummarizedExperiment-method | Man page |
| matchMotifs,PWMatrixList,character-method | Man page |
| matchMotifs_helper | Source code |
| match_motifs | Man page Source code |
| motifCounts | Man page |
| motifCounts,SummarizedExperiment-method | Man page |
| motifMatches | Man page |
| motifMatches,SummarizedExperiment-method | Man page |
| motifScores | Man page |
| motifScores,SummarizedExperiment-method | Man page |
| motif_counts | Man page Source code |
| motif_matches | Man page Source code |
| motif_scores | Man page Source code |
| motifmatchr | Man page |
| motifmatchr-package | Man page |
| motifmatchr_deprecated | Man page |
| pwmType | Man page Source code |
| pwm_type | Source code |
