motifmatchr: motifmatchr: Fast Motif Matching in R
In motifmatchr: Fast Motif Matching in R
Description
The motifmatchr package is designed for analyzing many sequences and many
motifs to find which sequences contain which motifs.
Details
motifmatchr uses the MOODS C++ library (developedby Pasi Rastas,
Janne Korhonen, and Petri Martinmaki) internally for motif matching.
The primary method of motifmatchr is matchMotifs, which takes
in motif PWMs/PFMs and genomic ranges or sequences and returns either which
ranges/sequences match which motifs or the positions of the matches.
Compared with alternative motif matching functions available in Bioconductor
(e.g. matchPWM in Biostrings or searchSeq in TFBSTools), motifmatchr is
designed specifically for the use case of determining whether many different
sequences/ranges contain many different motifs.
Author(s)
Alicia Schep
motifmatchr documentation built on Nov. 8, 2020, 8:09 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
The motifmatchr package is designed for analyzing many sequences and many motifs to find which sequences contain which motifs.
Details
motifmatchr uses the MOODS C++ library (developedby Pasi Rastas, Janne Korhonen, and Petri Martinmaki) internally for motif matching.
The primary method of motifmatchr is matchMotifs, which takes
in motif PWMs/PFMs and genomic ranges or sequences and returns either which
ranges/sequences match which motifs or the positions of the matches.
Compared with alternative motif matching functions available in Bioconductor (e.g. matchPWM in Biostrings or searchSeq in TFBSTools), motifmatchr is designed specifically for the use case of determining whether many different sequences/ranges contain many different motifs.
Author(s)
Alicia Schep
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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