motifMatches: motifMatches

In motifmatchr: Fast Motif Matching in R

Description

get motif matches from SummarizedExperiment object

Usage

motifMatches(object)

## S4 method for signature 'SummarizedExperiment'
motifMatches(object)

Arguments

object

SummarizedExperiment object with matches assay

Value

matrix with scores

Methods (by class)

• SummarizedExperiment: method for SummarizedExperiment

Examples

data(example_motifs, package = "motifmatchr")

# Make a set of peaks
peaks <- GenomicRanges::GRanges(seqnames = c("chr1","chr2","chr2"),
                ranges = IRanges::IRanges(start = c(76585873,42772928,
                                          100183786),
                                          width = 500))

# Get motif matches for example motifs
motif_ix <- matchMotifs(example_motifs, peaks,
                        genome = "BSgenome.Hsapiens.UCSC.hg19")

motifMatches(motif_ix)

motifmatchr documentation built on Nov. 8, 2020, 8:09 p.m.