This function creates an NDExConnection which stores options and authentication details. It is a parameter required for most of the other ndexr functions. If username and password are missing an anonymous connection is created, which already offers most of the retrieval functionality.
NDExConnection; stores options, authentication and api configuration
further arguments passed to or from other methods.
Just prints the NDExConnection object
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ndexcon = ndex_connect() ## log in anonymously print(ndexcon) ndexcon = ndex_connect(verbose=TRUE) ## same as above with extended feedback print(ndexcon) ## Not run: ## log in with credentials ndexcon = ndex_connect('user','password') print(ndexcon) ## running some NDEx server locally ndexcon = ndex_connect(host='localhost:8765') print(ndexcon) ## manually change the api and connection configuration ndexcon = ndex_connect(ndexConf=ndex_config$Version_2.0) print(ndexcon) ## End(Not run)
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