Description Usage Arguments Value Author(s) References Examples
Plot a specific transcriptional response for a given subnetwork. TRUE, colors = TRUE, plot_type = 'twopi', ...)
1 2 3 4 5 6 7 8 9 10 | plot_response(
x,
mynet,
mybreaks,
mypalette,
plot_names = TRUE,
colors = TRUE,
plot_type = "twopi",
...
)
|
x |
A numerical vector, or NULL. |
mynet |
Binary matrix specifying the interactions between nodes. |
mybreaks |
Specify breakpoints for color plot_ |
mypalette |
Specify palette for color plot_ |
plot_names |
Plot node names (TRUE) or indices (FALSE). |
colors |
Plot colors. Logical. |
plot_type |
Network plot mode. For instance, 'neato' or 'twopi'. |
... |
Further arguments for plot function. |
Used for its side-effects.
Leo Lahti, Olli-Pekka Huovilainen and Antonio Gusmao. Maintainer: Leo Lahti <leo.lahti@iki.fi>
L. Lahti et al.: Global modeling of transcriptional responses in interaction networks. Submitted.
1 2 | #tmp <- plot_response(model, mynet,
# \tmaintext = paste('Subnetwork', subnet.id))
|
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