Files in netresponse

Functional Network Analysis

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

src/netresponse.c

src/Makevars

data/osmo.rda

data/toydata.rda

data/dna.rda

R/toydata.R R/information.criteria.R R/plot_matrix.R R/check.network.R R/response2sample.R R/list.responses.continuous.multi.R R/pick.model.pairs.R R/independent.models.R R/bic.select.best.mode.R R/show-methods.R R/detect.responses.R R/enrichment.list.factor.minimal.R R/AllGenerics.R R/get.mis.R R/internals.R R/pick.model.parameters.R R/factor.responses.minimal.R R/check.matrix.R R/list.responses.continuous.R R/list.responses.factor.minimal.R R/PlotMixture.R R/vdp.mixt.R R/find.similar.features.R R/bic.mixture.univariate.R R/continuous.responses.R R/utilities.R R/add.ellipse.R R/bic.mixture.multivariate.R R/read.network.R R/PlotMixtureUnivariate.R R/enrichment.list.R R/update.model.pair.R R/visualization.R R/factor.responses.R R/model.stats.R R/mixture.model.R R/centerData.R R/plot-methods.R R/enrichment.list.factor.R R/AllClasses.R R/pkg-package.R R/response.enrichment.R R/enrichment.score.R R/bic.mixture.R R/sample2response.R R/mixture.densities.R R/NetResponseModel-accessors.R R/firstlib.R R/list.responses.factor.R R/listify.groupings.R R/filter.netw.R R/order.responses.R vignettes/NetResponse.md

vignettes/netresponse.bib

vignettes/main.R vignettes/NetResponse.Rmd vignettes/TODO/TODO.Rmd

vignettes/fig/vdp-1.png

vignettes/fig/NetResponse2-1.png

vignettes/fig/NetResponse7-1.png

vignettes/fig/NetResponse4-1.png

vignettes/fig/NetResponse2b-1.png

vignettes/fig/NetResponse5-1.png

vignettes/fig/NetResponse3-1.png

man/get.dat-NetResponseModel-method.Rd man/mixture.model.Rd man/plot_matrix.Rd man/enrichment.list.factor.minimal.Rd man/plot_responses.Rd man/factor.responses.Rd man/dna.Rd man/vectorize.groupings.Rd man/netresponse-package.Rd man/filter.netw.Rd man/plot_response.Rd man/get.subnets-NetResponseModel-method.Rd man/list.responses.continuous.single.Rd man/plot_scale.Rd man/response2sample.Rd man/check.network.Rd man/list.significant.responses.Rd man/sample2response.Rd man/check.matrix.Rd man/P.r.s.Rd man/vdp.mixt.Rd man/toydata.Rd man/plotPCA.Rd man/plot_associations.Rd man/find.similar.features.Rd man/read.sif.Rd man/order.responses.Rd man/plot_subnet.Rd man/response.enrichment.Rd man/remove.negative.edges.Rd man/getqofz-NetResponseModel-method.Rd man/factor.responses.minimal.Rd man/P.rs.joint.individual.Rd man/get.mis.Rd man/generate.toydata.Rd man/list.responses.continuous.multi.Rd man/continuous.responses.Rd man/get.model.parameters.Rd man/P.rS.Rd man/P.s.r.Rd man/listify.groupings.Rd man/detect.responses.Rd man/update.model.pair.Rd man/osmo.Rd man/add.ellipse.Rd man/list.responses.factor.minimal.Rd man/independent.models.Rd man/split.qofz.Rd man/list.responses.factor.Rd man/PlotMixtureBivariate.Rd man/set.breaks.Rd man/bic.mixture.univariate.Rd man/pick.model.parameters.Rd man/P.s.individual.Rd man/PlotMixture.Rd man/NetResponseModel-class.Rd man/plot_data.Rd man/bic.select.best.mode.Rd man/filter.network.Rd man/pick.model.pairs.Rd man/PlotMixtureUnivariate.Rd man/P.rs.joint.Rd man/bic.mixture.Rd man/enrichment.list.factor.Rd man/PlotMixtureMultivariate.Rd man/P.Sr.Rd man/centerData.Rd man/bic.mixture.multivariate.Rd man/model.stats.Rd man/plot_expression.Rd man/P.S.Rd man/write.netresponse.results.Rd tests/mixture.model.test.multimodal.R tests/mixture.model.test.singlemode.R tests/mixture.model.test.R tests/timing.R tests/toydata2.R tests/bicmixture.R tests/validate.pca.basis.R tests/validate.netresponse.R tests/vdpmixture.R

inst/NEWS

inst/CITATION

inst/doc/NetResponse.R

inst/doc/NetResponse.html

inst/doc/NetResponse.Rmd

netresponse documentation built on Nov. 8, 2020, 5:04 p.m.