binInsert: Insert Locations

In occugene: Functions for Multinomial Occupancy Distribution

Description

Returns the number of ORF knockouts.

Usage

binInsert(insert,orf,returnCounts=FALSE,overlap=NULL,DEBUG=FALSE)

Arguments

insert	List of insertion locations
orf	2-column matrix of annotation
returnCounts	Return the number of insertions
overlap	Number of shared targets
DEBUG	Flag to debug the code

Details

Finds the number of ORFs that have an insertion given a list of locations. If the returnCounts flag is true, the function returns the number of insertions per ORF. Uses the function hist for gains in speed.

Value

Returns a numeric or an object

Author(s)

Oliver Will [e-mail]

References

See the book chapter O. Will (**) in **.

Examples

# **

occugene documentation built on Nov. 8, 2020, 8:10 p.m.