etDelta: Number of New ORF Knockouts

In occugene: Functions for Multinomial Occupancy Distribution

Description

Estimates the number of new knockouts in next d clones.

Usage

etDelta(d,anno,clone)

Arguments

d	number of new clones
anno	2-column matrix of annotation
clone	vector

Details

Estimates the number of new ORF knockouts in the next d clones using the method outlined by Efron and Thisted.

Value

expected	Expected value
variance	Variance

Author(s)

Oliver Will [e-mail]

References

See the book chapter O. Will (**) in ** and also Efron, B. and Thisted, R. (1976) Estimating the number of unseen species: How many words did Shakespere know? Biometrika. 63, 435-447.

Examples

data(sampleAnnotation)
data(sampleInsertions)
a.data <- sampleAnnotation
experiment <- sampleInsertions
orf <- cbind(a.data$first,a.data$last)
clone <- experiment$position
etDelta(10,orf,clone)

occugene documentation built on Nov. 8, 2020, 8:10 p.m.