fFit: Parametric Fit for the Cumulative Occupancy Distribution

In occugene: Functions for Multinomial Occupancy Distribution

Description

Parameterizes the cumulative occupancy distribution.

Usage

fFit(anno,clone,TR=TRUE,b0=0,b1=0,b2=.0)

Arguments

anno	2-column matrix of annotation
clone	vector
TR	Report a trace
b0	Starting value b0
b1	Starting value b1
b2	Starting value b2

Details

Fits various parametric functions to the occupancy distribution for a multinomial. Using the starting values of b0=0, b1=0, and b2=0 forces the function to find starting values for you.

Value

Returns a object.

Author(s)

Oliver Will [e-mail]

References

See the book chapter O. Will (**) in **

Examples

data(sampleAnnotation)
data(sampleInsertions)
anno <- cbind(sampleAnnotation$first,sampleAnnotation$last)
clone <- sampleInsertions$position
TR <- TRUE
fm <- fFit(anno,clone,TR)

occugene documentation built on Nov. 8, 2020, 8:10 p.m.