occup2Negenes: Convert Occupancy Format to Negenes

In occugene: Functions for Multinomial Occupancy Distribution

Description

Convert the annotation and insertion formation of the occupancy package into the format for the negenes package.

Usage

occup2Negenes(anno,clone,INTERGENIC=FALSE)

Arguments

anno	2-column matrix of annotation
clone	vector of insertion locations
INTERGENIC	Process the intergenic region as last ORF.

Details

Convert the annotation and insertion formation of the occupancy package into the format for the negenes package. Of the returned data frame, column 1 is n.sites, column 2, n.sites2, column 3, counts, column 4, counts2.

Value

Returns a data frame

Author(s)

Oliver Will [e-mail]

References

See the book chapter O. Will (**) in **

Examples

data(sampleAnnotation)
data(sampleInsertions)
anno <- cbind(sampleAnnotation$first,sampleAnnotation$last)
clone <- sampleInsertions$position
occup2Negenes(anno,clone)

occugene documentation built on Nov. 8, 2020, 8:10 p.m.