liberalMap: Produce a data.frame with a set of naive terms mapped to all...
In ontoProc: processing of ontologies of anatomy, cell lines, and so on
Description
Usage
Arguments
Value
Examples
Description
Produce a data.frame with a set of naive terms mapped to all matching ontology ids and their formal terms
Usage
1
liberalMap(terms, onto, useAgrep = FALSE, ...)
Arguments
terms
character() vector, can use grep-compatible regular expressions
onto
an instance of ontologyIndex::ontology_index
useAgrep
logical(1) if TRUE, agrep will be used
...
passed to agrep if used
Value
a data.frame
Examples
1
2
3
4
cands = c("astrocyte$", "oligodendrocyte", "oligodendrocyte precursor",
"neoplastic", "^neuron$", "^vascular", "badterm")
co = ontoProc::getCellOnto()
liberalMap(cands, co)
ontoProc documentation built on Nov. 8, 2020, 4:49 p.m.
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Description Usage Arguments Value Examples
Description
Produce a data.frame with a set of naive terms mapped to all matching ontology ids and their formal terms
Usage
1 | liberalMap(terms, onto, useAgrep = FALSE, ...)
|
Arguments
terms |
character() vector, can use grep-compatible regular expressions |
onto |
an instance of ontologyIndex::ontology_index |
useAgrep |
logical(1) if TRUE, agrep will be used |
... |
passed to agrep if used |
Value
a data.frame
Examples
1 2 3 4 | cands = c("astrocyte$", "oligodendrocyte", "oligodendrocyte precursor",
"neoplastic", "^neuron$", "^vascular", "badterm")
co = ontoProc::getCellOnto()
liberalMap(cands, co)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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