oppar: Outlier profile and pathway analysis in R

The R implementation of mCOPA package published by Wang et al. (2012). Oppar provides methods for Cancer Outlier profile Analysis. Although initially developed to detect outlier genes in cancer studies, methods presented in oppar can be used for outlier profile analysis in general. In addition, tools are provided for gene set enrichment and pathway analysis.

Package details

AuthorChenwei Wang [aut], Alperen Taciroglu [aut], Stefan R Maetschke [aut], Colleen C Nelson [aut], Mark Ragan [aut], Melissa Davis [aut], Soroor Hediyeh zadeh [cre], Momeneh Foroutan [ctr]
Bioconductor views GeneExpression GeneSetEnrichment Pathways Software SystemsBiology
MaintainerSoroor Hediyeh zadeh <hediyehzadeh.s@wehi.edu.au>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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oppar documentation built on Nov. 8, 2020, 7:37 p.m.