maupin: Maupin's TGFb data and a TGFb gene signature

In oppar: Outlier profile and pathway analysis in R

Description

A list consisting of two components: data: A matrix consisting of gene expression values on 3 control and 3 TGFb treated samples. sig: A TGFb gene signature. A dataframe containing a gene signature and information on whether genes in the signature are up or dow regulated.

Usage

data(Maupin)

Format

A list of two components:

M_Ctrl_R1

In data; Control Sample - Replicate 1

M_Ctrl_R2

In data; Control Sample - Replicate 2

M_Ctrl_R3

In data; Control Sample - Replicate 3

M_TGFb_R1

In data; Control Sample - Replicate 1

M_TGFb_R2

In data; Control Sample - Replicate 2

M_TGFb_R3

In data; Control Sample - Replicate 3

EntrezID

In sig; The Entrez IDs

Symbol

In sig; Gene symbols

upDown

In sig; Direction of regulation e.g. up, down

Value

A list of 2

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE23952

oppar documentation built on Nov. 8, 2020, 7:37 p.m.