oppar: oppar: A package for outlier profile and pathway analysis.


The oppar package provides 3 main function for outlier profile analysis: opa, getSampleOutlier and getSubtypeProbes, and 1 function for pathway and gene set enrichment analysis, based on gsva function implemented in the GSVA package


calculates the outlier profile matrix, using the method proposed in Wang et al. (2012) paper


extracts outlier profile for individual samples


extracts outlier profile for a group of related samples, such as subtypes

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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