plotPway: Checks if an object is from the one sample or two samples...
In pathVar: Methods to Find Pathways with Significantly Different Variability

Description Usage Arguments Details Value Author(s) Examples

Checks if an object is from the one sample or two samples cases and then plots reference distribution and the chosen pathway.

1	plotPway(pvalue_results,pathway,sig)

`pvalue_results`	output of `pathVarTwoSamples` or `pathVarOneSample` step.
`pathway`	the chosen pathway you want to plot.
`sig`	output of `sigPway` or NULL.

Plots the results of the one or two samples case for a chosen pathway.

A plot of the results from sigPway.

Laurence de Torrente, Samuel Zimmerman, Jessica Mar

# we run the 2 samples analysis on the first 10 pathways from kegg
pways.kegg.10pways <- lapply(pways.kegg, function(x) x[1:10])
results_2samples=pathVarTwoSamplesCont(bock,pways.kegg.10pways,groups=as.factor(c(rep(1,10),rep(2,10))))
sigPways <- sigPway(results_2samples,0.05)
plotPway(results_2samples,"Glycolysis / Gluconeogenesis",sigPways)