saveAsPDF: Save the plots of the significant pathway or a chosen list of...
In pathVar: Methods to Find Pathways with Significantly Different Variability

Description Usage Arguments Details Value Author(s) Examples

Save the plots of the significant pathway or a chosen list of pathways as a pdf.

1	saveAsPDF(pvalue_results,sig,listPath="significant")

`pvalue_results`	output of `pathVarTwoSamples` or `pathVarOneSample` step.
`sig`	output of `sigPway` or NULL.
`listPath`	the string "significant" if you want to save the plots of the significant pathways or a list of names of pathways of interest.

Save the plots of the significant pathway or a chosen list of pathways as a pdf.

A pdf of the results from sigPway.

Laurence de Torrente, Samuel Zimmerman, Jessica Mar

# we run the 2 samples analysis on the first 10 pathways from kegg
pways.kegg.10pways <- lapply(pways.kegg, function(x) x[1:10])
results_2samples=pathVarTwoSamplesCont(bock, pways.kegg.10pways,groups=as.factor(c(rep(1,10),rep(2,10))))
sigPways <- sigPway(results_2samples,0.05)
saveAsPDF(results_2samples,sigPways,listPath="significant")