sigPway: A function checks if an object is from the one sample or two...
In pathVar: Methods to Find Pathways with Significantly Different Variability

Description Usage Arguments Details Value Author(s) Examples

A function checks if an object is from the one sample or two samples cases and then finds the significant pathways.

1	sigPway(pvalue_results, pvalue)

`pvalue_results`	`geneDistributionSet2` object and the output of the `pathVarTwoSamples` function or `geneDistributionSet` object and the output of the `pathVarOneSample`.
`pvalue`	the significance level to test.

This function takes the output pathVarTwoSamples or pathVarOneSample and returns a significantPathway2 or significantPathway object specifying the significant pathway(s) and which gene(s) belongs to the significant pathway(s).

A significantPathway2 object or significantPathway object is returned.

Laurence de Torrente, Samuel Zimmerman, Jessica Mar

1 2	results_2samples=pathVarTwoSamplesCont(bock,pways.kegg,groups=as.factor(c(rep(1,10),rep(2,10))),boot=1000,varStat="sd") sig_kegg=sigPway(results_2samples,0.05)