getGDS: Load ExpressionSet from GEO Datasets
In phantasus: Visual and interactive gene expression analysis
Description
Usage
Arguments
Value
Examples
Description
getGDS return the ExpressionSet object corresponding
to GEO Dataset identifier.
Usage
1
Arguments
name
String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.
destdir
Directory for caching loaded Series and GPL
files from GEO database.
mirrorPath
URL string which specifies the source of matrices.
Value
ExpressionSet object wrapped in list, that was available by given
in name variable GEO identifier.
Examples
1
getGDS('GDS4922')
phantasus documentation built on Nov. 8, 2020, 6:39 p.m.
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Description Usage Arguments Value Examples
Description
getGDS return the ExpressionSet object corresponding
to GEO Dataset identifier.
Usage
1 |
Arguments
name |
String, containing GEO identifier of the dataset. It should start with 'GSE' or 'GDS' and can include exact GPL to annotate dataset, separated with dash ('-') from the identifier. |
destdir |
Directory for caching loaded Series and GPL files from GEO database. |
mirrorPath |
URL string which specifies the source of matrices. |
Value
ExpressionSet object wrapped in list, that was available by given
in name variable GEO identifier.
Examples
1 | getGDS('GDS4922')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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