limmaAnalysis: Differential Expression analysis.
In phantasus: Visual and interactive gene expression analysis
Description
Usage
Arguments
Value
Examples
View source: R/limmaAnalysis.R
Description
limmaAnalysis performs differential expression analysis
from limma package and returns a ProtoBuf-serialized resulting
de-matrix.
Usage
1
limmaAnalysis(es, fieldValues)
Arguments
es
ExpressionSet object. It should be normalized for
more accurate analysis.
fieldValues
Vector of comparison values, mapping
categories' names to columns/samples
Value
Name of the file containing serialized de-matrix.
Examples
1
2
3
4
5
## Not run:
data(es)
limmaAnalysis(es, fieldValues = c("A", "A", "A", "B", "B"))
## End(Not run)
phantasus documentation built on Nov. 8, 2020, 6:39 p.m.
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Description Usage Arguments Value Examples
View source: R/limmaAnalysis.R
Description
limmaAnalysis performs differential expression analysis
from limma package and returns a ProtoBuf-serialized resulting
de-matrix.
Usage
1 | limmaAnalysis(es, fieldValues)
|
Arguments
es |
ExpressionSet object. It should be normalized for more accurate analysis. |
fieldValues |
Vector of comparison values, mapping categories' names to columns/samples |
Value
Name of the file containing serialized de-matrix.
Examples
1 2 3 4 5 | ## Not run:
data(es)
limmaAnalysis(es, fieldValues = c("A", "A", "A", "B", "B"))
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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