read.gct: Reads ExpressionSet from a GCT file.

In phantasus: Visual and interactive gene expression analysis

Description

Only versions 1.2 and 1.3 are supported.

Usage

read.gct(gct, ...)

Arguments

gct	Path to gct file
...	additional options for read.csv

Value

ExpressionSet object

Examples

read.gct(system.file("extdata", "centers.gct", package = "phantasus"))

Example output

Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading config from /usr/lib/R/site-library/opencpu/config/defaults.conf
ExpressionSet (storageMode: lockedEnvironment)
assayData: 6 features, 8 samples 
  element names: exprs 
protocolData: none
phenoData: none
featureData
  featureNames: AACCATGTCATGGTCA AACCATGTCGCGGATC ... AACCGCGAGATAGCAT
    (6 total)
  fvarLabels: id
  fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
Annotation:  

phantasus documentation built on Nov. 8, 2020, 6:39 p.m.