loadGEO: Load GEO Dataset.

In phantasus: Visual and interactive gene expression analysis

Description

loadGEO returns the file with serialized ExpressionSet using ProtoBuf, parsed from data downloaded from GEO by identifier.

Usage

loadGEO(name, type = NA)

Arguments

name	String, containing GEO identifier of the dataset. It should start with 'GSE' or 'GDS' and can include exact GPL to annotate dataset, separated with dash ('-') from the identifier.
type	Type of the dataset: 'GSE' or 'GDS'. If not specified, the function will take first three letters of name variable as type.

Value

File with ProtoBuf-serialized ExpressionSet-s that were downloaded by this identifier. For GSE-datasets there can be multiple annotations, so in file will be a list mapping name with GPL to ExpressionSet.

Examples

## Not run: 
    loadGEO("GSE27112")
    loadGEO("GDS4922")

## End(Not run)

phantasus documentation built on Nov. 8, 2020, 6:39 p.m.