GSAsummaryTable: Gene set analysis summary table
In piano: Platform for integrative analysis of omics data

Description Usage Arguments Details Value Author(s) See Also Examples

Displays or saves a summary table of the results from runGSA.

1	GSAsummaryTable(gsaRes, save = FALSE, file = NULL)

`gsaRes`	an object of class `GSAres`, as returned from `runGSA()`.
`save`	a logical, whether or not to save the table.
`file`	a character string giving the file name to save to.

The table is by default saved as an .xls file, if file is unused.

The summary table as a data.frame (returned invisibly if save=TRUE).

Leif Varemo piano.rpkg@gmail.com and Intawat Nookaew piano.rpkg@gmail.com

piano, runGSA, networkPlot, GSAheatmap

   # Load example input data to GSA:
   data("gsa_input")
   
   # Load gene set collection:
   gsc <- loadGSC(gsa_input$gsc)
      
   # Run gene set analysis:
   gsares <- runGSA(geneLevelStats=gsa_input$pvals , directions=gsa_input$directions, 
                    gsc=gsc, nPerm=500)
      
   # Summary table:
   GSAsummaryTable(gsares)