GSAsummaryTable: Gene set analysis summary table

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/GSAsummaryTable.R

Description

Displays or saves a summary table of the results from runGSA.

Usage

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Arguments

gsaRes

an object of class GSAres, as returned from runGSA().

save

a logical, whether or not to save the table.

file

a character string giving the file name to save to.

Details

The table is by default saved as an .xls file, if file is unused.

Value

The summary table as a data.frame (returned invisibly if save=TRUE).

Author(s)

Leif Varemo [email protected] and Intawat Nookaew [email protected]

See Also

piano, runGSA, networkPlot, GSAheatmap

Examples

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   # Load example input data to GSA:
   data("gsa_input")
   
   # Load gene set collection:
   gsc <- loadGSC(gsa_input$gsc)
      
   # Run gene set analysis:
   gsares <- runGSA(geneLevelStats=gsa_input$pvals , directions=gsa_input$directions, 
                    gsc=gsc, nPerm=500)
      
   # Summary table:
   GSAsummaryTable(gsares)  

piano documentation built on Nov. 1, 2018, 2:23 a.m.