Files in piano
Platform for integrative analysis of omics data

NEWS
DESCRIPTION
README.md
NAMESPACE
inst/CITATION
inst/shiny/loggo.png
inst/shiny/css/cosmo.css
inst/shiny/css/style.css
inst/shiny/css/toggle_switch.css
inst/doc/piano-vignette.R inst/doc/piano-vignette.pdf inst/doc/Running_gene-set_analysis_with_piano.Rmd inst/doc/Running_gene-set_analysis_with_piano.R
inst/doc/Running_gene-set_analysis_with_piano.html
inst/doc/piano-vignette.Rnw
inst/extdata/setup.txt
inst/extdata/probe2metabolites_iIN800.txt.gz
inst/extdata/norm_data.txt.gz
inst/extdata/probe2metabolites_iTO977.txt.gz
vignettes/rungsa.png
vignettes/naturenobf.bst
vignettes/diffexpfig.pdf vignettes/networkplot2.pdf
vignettes/references.bib
vignettes/heatmap.pdf vignettes/networkplot.pdf
vignettes/consensus.png
vignettes/qcfig.pdf vignettes/Running_gene-set_analysis_with_piano.Rmd
vignettes/piano-vignette.Rnw
R/diffExp.r R/pvalFromFractionGenePerm.R R/GSCstatBatch.R R/loadMAdata.r R/GSAsummaryTable.R R/extractFactors.r R/checkLoadArg.r R/runGSAhyper.R R/exploreGSAres.R R/runGSA.r R/networkPlot2.R R/GSCstatGenePerm.R R/consensusScores.R R/calcGeneSetStat.R R/print_GSAres.R R/geneSetSummary.R R/GSAheatmap.R R/runQC.r R/pvalFromDistribution.R R/writeFilesForKiwi.R R/piano-package.R R/loadGSC.R R/polarPlot.r R/GSCstatSamplePerm.R R/consensusHeatmap.R R/GSCsignificanceBatch.R R/print_ArrayData.r R/networkPlot.R R/pvalFromFractionSamplePerm.R R/print_GSC.R R/fdrGSEA.R man/consensusScores.Rd man/networkPlot2.Rd man/loadMAdata.Rd man/GSAsummaryTable.Rd man/gsa_results.Rd man/runQC.Rd man/geneSetSummary.Rd man/runGSA.Rd man/consensusHeatmap.Rd man/loadGSC.Rd man/writeFilesForKiwi.Rd man/gsa_input.Rd man/diffExp.Rd man/piano-package.Rd man/GSAheatmap.Rd man/extractFactors.Rd man/exploreGSAres.Rd man/networkPlot.Rd man/polarPlot.Rd man/runGSAhyper.Rd
build/vignette.rds
data/gsa_input.RData
data/gsa_results.RData
piano documentation built on Oct. 31, 2019, 3:20 a.m.