assignColours: Assigns colours to samples in groups
In qPLEXanalyzer: Tools for qPLEX-RIME data analysis
Description
Usage
Arguments
Value
Examples
View source: R/assignColours.R
Description
Assigns colours to samples in groups for plotting
Usage
1
assignColours(MSnSetObj, colourBy = "SampleGroup")
Arguments
MSnSetObj
MSnSet; an object of class MSnSet
colourBy
character: column name from pData(MSnSetObj) to use for
coloring samples
Value
A character vector of colors for samples.
Examples
1
2
3
4
5
6
data(human_anno)
data(exp3_OHT_ESR1)
MSnSet_data <- convertToMSnset(exp3_OHT_ESR1$intensities_qPLEX1,
metadata=exp3_OHT_ESR1$metadata_qPLEX1,
indExpData=c(7:16), Sequences=2, Accessions=6)
sampleColours <- assignColours(MSnSet_data)
qPLEXanalyzer documentation built on Feb. 3, 2021, 2:01 a.m.
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Description Usage Arguments Value Examples
View source: R/assignColours.R
Description
Assigns colours to samples in groups for plotting
Usage
1 | assignColours(MSnSetObj, colourBy = "SampleGroup")
|
Arguments
MSnSetObj |
MSnSet; an object of class MSnSet |
colourBy |
character: column name from pData(MSnSetObj) to use for coloring samples |
Value
A character vector of colors for samples.
Examples
1 2 3 4 5 6 | data(human_anno)
data(exp3_OHT_ESR1)
MSnSet_data <- convertToMSnset(exp3_OHT_ESR1$intensities_qPLEX1,
metadata=exp3_OHT_ESR1$metadata_qPLEX1,
indExpData=c(7:16), Sequences=2, Accessions=6)
sampleColours <- assignColours(MSnSet_data)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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