rowScaling: Normalization by scaling peptide/protein intensity across all...
In qPLEXanalyzer: Tools for qPLEX-RIME data analysis
Description
Usage
Arguments
Value
Examples
Description
Divide each peptide/protein by the row mean/median and transform to log2
Usage
1
rowScaling(MSnSetObj, scalingFunction)
Arguments
MSnSetObj
MSnSet; an object of class MSnSet
scalingFunction
function; median or mean
Value
An object of class MSnSet (see MSnSet-class).
Examples
1
2
3
4
5
6
7
8
data(human_anno)
data(exp3_OHT_ESR1)
MSnSet_data <- convertToMSnset(exp3_OHT_ESR1$intensities_qPLEX1,
metadata=exp3_OHT_ESR1$metadata_qPLEX1,
indExpData=c(7:16),
Sequences=2,
Accessions=6)
MSnset_norm <- rowScaling(MSnSet_data, scalingFunction=median)
qPLEXanalyzer documentation built on Feb. 3, 2021, 2:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Divide each peptide/protein by the row mean/median and transform to log2
Usage
1 | rowScaling(MSnSetObj, scalingFunction)
|
Arguments
MSnSetObj |
MSnSet; an object of class MSnSet |
scalingFunction |
function; median or mean |
Value
An object of class MSnSet (see MSnSet-class).
Examples
1 2 3 4 5 6 7 8 | data(human_anno)
data(exp3_OHT_ESR1)
MSnSet_data <- convertToMSnset(exp3_OHT_ESR1$intensities_qPLEX1,
metadata=exp3_OHT_ESR1$metadata_qPLEX1,
indExpData=c(7:16),
Sequences=2,
Accessions=6)
MSnset_norm <- rowScaling(MSnSet_data, scalingFunction=median)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.