addBiopaxInstances: This function adds new instances to an existing biopax model.

Description Usage Arguments Value Author(s) Examples

View source: R/modifyBiopax.R

Description

This function adds new instances (supplied as a compatible data.table) to an existing biopax model via rbind. Usually you want to start out at createBiopax and addPhysicalEntity and work your way up the ontology ladder.

Usage

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addBiopaxInstances(biopax, newInstancesDF)

Arguments

biopax

A biopax model

newInstancesDF

data.table or data.frame. Must be compatible with internal biopax implementation.

Value

Returns the supplied biopax model with the new instances added.

Author(s)

Frank Kramer

Examples

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# load data
 data(biopaxexample)
 biopax_temp = createBiopax(level=2)
 biopax_temp = addBiopaxInstance(biopax_temp, class="protein", id="id1", properties=list(NAME="protein1",SYNONYMS="p1"))
 selectInstances(biopax_temp)
 biopax = addBiopaxInstances(biopax, selectInstances(biopax_temp))

rBiopaxParser documentation built on May 31, 2017, 2:24 p.m.

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