diffGraphs: This function returns the different nodes and edges between...

Description Usage Arguments Value Author(s) Examples

View source: R/visualizeBiopax.R

Description

This function returns the different nodes and edges between graph1 and graph2. Layout options of graph1 are kept. Coloring currently not implemented.

Usage

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diffGraphs(graph1, graph2, colorNodes = TRUE, colors = c("#B3E2CD",
  "#FDCDAC"))

Arguments

graph1

graphNEL

graph2

graphNEL

colorNodes

logical

colors

character vector of colors. If colorNodes==TRUE these colors are used for graph1 and graph2 respectivley.

Value

Return the diff between the graphs.

Author(s)

Frank Kramer

Examples

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 # load data
 data(biopaxexample)
 pwid1 = "pid_p_100002_wntpathway"
 pwid2 = "pid_p_100146_hespathway"
 mygraph1 = pathway2RegulatoryGraph(biopax, pwid1)
 mygraph2 = pathway2RegulatoryGraph(biopax, pwid2)
 plotRegulatoryGraph(diffGraphs(mygraph1,mygraph2))

rBiopaxParser documentation built on May 20, 2017, 10:14 p.m.

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