API for ramwas
Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms

Global functions
cachedRDSload Man page
colSumsSq Man page
estimateFragmentSizeDistribution Man page
findBestNpvs Man page
getCpGsetALL Man page
getCpGsetCG Man page
getDataByLocation Man page
getLocations Man page
getMWAS Man page
getMWASandLocations Man page
getMWASrange Man page
injectSNPsMAF Man page
insilicoFASTQ Man page
isAbsolutePath Man page
madeBED Man page
madeBEDgraph Man page
madeBEDgraphRange Man page
madeBEDrange Man page
makefullpath Man page
manPlotFast Man page
manPlotPrepare Man page
mat2cols Man page
orthonormalizeCovariates Man page
parameterDump Man page
parameterPreprocess Man page
parametersFromFile Man page
pipeline Man page
pipelineProcessBam Man page
plot.qcCoverageByDensity Man page
plot.qcEditDist Man page
plot.qcEditDistBF Man page
plot.qcHistScore Man page
plot.qcHistScoreBF Man page
plot.qcIsoDist Man page
plot.qcLengthMatched Man page
plot.qcLengthMatchedBF Man page
plotCVcors Man page
plotFragmentSizeDistributionEstimate Man page
plotPCvalues Man page
plotPCvectors Man page
plotPrediction Man page
plotROC Man page
processCommandLine Man page
pvalue2qvalue Man page
qcmean Man page
qcmean.NULL Man page
qcmean.qcChrX Man page
qcmean.qcChrY Man page
qcmean.qcCoverageByDensity Man page
qcmean.qcEditDist Man page
qcmean.qcEditDistBF Man page
qcmean.qcFrwrev Man page
qcmean.qcHistScore Man page
qcmean.qcHistScoreBF Man page
qcmean.qcIsoDist Man page
qcmean.qcLengthMatched Man page
qcmean.qcLengthMatchedBF Man page
qcmean.qcNonCpGreads Man page
qqPlotFast Man page
qqPlotPrepare Man page
ramwas Man page
ramwas-package Man page
ramwas0createArtificialData Man page
ramwas1scanBams Man page
ramwas2collectqc Man page
ramwas3normalizedCoverage Man page
ramwas4PCA Man page
ramwas5MWAS Man page
ramwas6annotateTopFindings Man page
ramwas7ArunMWASes Man page
ramwas7BrunElasticNet Man page
ramwas7CplotByNCpGs Man page
ramwas7riskScoreCV Man page
ramwasAnnotateLocations Man page
ramwasParameters Man page
ramwasSNPs Man page
rowSumsSq Man page
rwDataClass Man page
rwDataClass-class Man page
subsetCoverageDirByLocation Man page
testPhenotype Man page
ramwas documentation built on May 6, 2019, 2:52 a.m.