pvalue2qvalue: Calculate Benjamini-Hochberg q-values
In ramwas: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms

Description Usage Arguments Details Value Note Author(s) Examples

Calculate Benjamini-Hochberg q-values for a vector of p-values.

1	pvalue2qvalue(pv, n = length(pv))

`pv`	Vector of p-values.
`n`	If `pv` has only top p-values from a bigger set, `n` should indicate the number of tests performed.

The q-values can be slightly conservative compared to other popular q-value calculation methods.

Return a vector of q-values matching p-values in pv.

The function runs faster if the vector pv is sorted.

Andrey A Shabalin andrey.shabalin@gmail.com

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pv = runif(20)^2

qv = pvalue2qvalue(pv)

Loading required package: filematrix
Warning messages:
1: no function found corresponding to methods exports from 'DelayedArray' for: 'acbind', 'arbind' 
2: no function found corresponding to methods exports from 'SummarizedExperiment' for: 'acbind', 'arbind' 
3: replacing previous import 'BiocGenerics::path' by 'Rsamtools::path' when loading 'GenomicAlignments' 
4: multiple methods tables found for 'rglist'