Files in ramwas
Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms

NEWS
DESCRIPTION
NAMESPACE
inst/CITATION
inst/doc/RW5a_matrix.Rmd inst/doc/RW5c_matrix.Rmd inst/doc/RW4_SNPs.Rmd inst/doc/RW3_BAM_QCs.R
inst/doc/RW4_SNPs.html
inst/doc/RW5a_matrix.R inst/doc/RW4_SNPs.R inst/doc/RW1_intro.Rmd inst/doc/RW3_BAM_QCs.Rmd inst/doc/RW2_CpG_sets.Rmd
inst/doc/RW6_param.html
inst/doc/RW5a_matrix.html
inst/doc/RW6_param.R
inst/doc/RW3_BAM_QCs.html
inst/doc/RW2_CpG_sets.html
inst/doc/RW2_CpG_sets.R inst/doc/RW6_param.Rmd inst/doc/RW5c_matrix.R inst/doc/RW1_intro.R
inst/doc/RW1_intro.html
inst/doc/RW5c_matrix.html
inst/extdata/cpgset.rds
inst/extdata/param_file.txt
inst/extdata/qc_sample.rds
inst/extdata/small.bam
inst/extdata/bigQC.rds
vignettes/PCval.png
vignettes/RW5a_matrix.Rmd
vignettes/Flow.png
vignettes/RW5c_matrix.Rmd vignettes/RW4_SNPs.Rmd vignettes/RW1_intro.Rmd vignettes/RW3_BAM_QCs.Rmd vignettes/RW2_CpG_sets.Rmd
vignettes/bib.bib
vignettes/QQfull.png
vignettes/QQnull.png
vignettes/RW6_param.Rmd
vignettes/PCvec.png
R/rw6anno.r R/rwCellTypeEst.r R/rw1scanBam.r R/rwCpGset.r R/ramwas.r R/rw2collectqc.r R/rowcolSumSq.r R/rw7mmcv.r R/rwDataClass.r R/bam_qc_calc.r R/rw0simdata.r R/bam_qc_plot.r R/rwSNPS.r R/getByLocation.r R/rw5mwas.r R/rw3covMatrix.r R/rwDataSubset.r R/rw4pca.r R/plotting.r R/param.r
src/rw_c_code.c
man/parameterPreprocess.Rd man/ramwasParameters.Rd man/ramwas0createArtificialData.Rd man/plotCV.Rd man/processCommandLine.Rd man/pvalue2qvalue.Rd man/MakeBED.Rd man/get.Rd man/ramwasAnnotateLocations.Rd man/parameterDump.Rd man/qqplotFast.Rd man/findBestNpvs.Rd man/insilicoFASTQ.Rd man/QCs.Rd man/pipeline.Rd man/makefullpath.Rd man/mat2cols.Rd man/parametersFromFile.Rd man/RaMWAS.Rd man/manhattan.Rd man/rowcolSumSq.Rd man/cachedRDSload.Rd man/injectSNPsMAF.Rd man/getCpGset.Rd man/subsetData.Rd man/plotFragmentSizeDistributionEstimate.Rd man/testPhenotype.Rd man/rwDataClass-class.Rd man/plotPC.Rd man/isAbsolutePath.Rd man/orthonormalizeCovariates.Rd
man/figures/hint.png
build/vignette.rds
ramwas documentation built on May 6, 2019, 2:52 a.m.