The pipeline parameters can be provided via command line.
R pipeline.r dirproject="/project" maxrepeats=0 modeloutcome="Age"
Each command line argument is treated as an R statement.
All variables defined this way are collected in a list which is returned.
Vector of command line parameters. Obtained from
If a command line argument defines variable
it is assumed to be a filename, and the file with this name
is scanned for extra pipeline parameters,
Returns the list with all the variables set by the statement in the command line.
Variables with names starting with period (.) are ignored.
Andrey A Shabalin [email protected]
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