getDrugActivityRepeatData: Returns a matrix containing repeat activity experiment data...

Description Usage Arguments Value Examples

View source: R/getDrugActivityRepeatData.R

Description

Returns a matrix containing repeat activity experiment data for a compound.

Usage

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getDrugActivityRepeatData(
  nscStr,
  concFormat = "NegLogGI50M",
  onlyCellMinerExps = TRUE
)

Arguments

nscStr

a string specifying the NSC identifier for the compound.

concFormat

a string selected from "NegLogGI50M" or "IC50MicroM". "NegLogGI50M" specifies activities as the negative log of the 50 inhibitory concentration (molar). "IC50MicroM" specifies activities as the 50 growth inhibitory concentration (micromolar).

onlyCellMinerExps

a logical value indicating whether to only return experimental data included in CellMiner (default=TRUE).

Value

a matrix with activity data from each experiment associated with a compound organized along the rows.

Examples

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nscStr <- "609699"
actData <- getDrugActivityRepeatData(nscStr, concFormat='NegLogGI50M')
actData <- getDrugActivityRepeatData(nscStr, concFormat='IC50MicroM')

rcellminer documentation built on Nov. 26, 2020, 2:02 a.m.