getDrugActivityRepeatData: Returns a matrix containing repeat activity experiment data...
In rcellminer: rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines
Description
Usage
Arguments
Value
Examples
View source: R/getDrugActivityRepeatData.R
Description
Returns a matrix containing repeat activity experiment data for a compound.
Usage
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getDrugActivityRepeatData(
nscStr,
concFormat = "NegLogGI50M",
onlyCellMinerExps = TRUE
)
Arguments
nscStr
a string specifying the NSC identifier for the compound.
concFormat
a string selected from "NegLogGI50M" or "IC50MicroM".
"NegLogGI50M" specifies activities as the negative log of the 50
inhibitory concentration (molar). "IC50MicroM" specifies activities as the 50
growth inhibitory concentration (micromolar).
onlyCellMinerExps
a logical value indicating whether to only return
experimental data included in CellMiner (default=TRUE).
Value
a matrix with activity data from each experiment associated with
a compound organized along the rows.
Examples
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nscStr <- "609699"
actData <- getDrugActivityRepeatData(nscStr, concFormat='NegLogGI50M')
actData <- getDrugActivityRepeatData(nscStr, concFormat='IC50MicroM')
rcellminer documentation built on Nov. 26, 2020, 2:02 a.m.
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Description Usage Arguments Value Examples
View source: R/getDrugActivityRepeatData.R
Description
Returns a matrix containing repeat activity experiment data for a compound.
Usage
1 2 3 4 5 | getDrugActivityRepeatData(
nscStr,
concFormat = "NegLogGI50M",
onlyCellMinerExps = TRUE
)
|
Arguments
nscStr |
a string specifying the NSC identifier for the compound. |
concFormat |
a string selected from "NegLogGI50M" or "IC50MicroM". "NegLogGI50M" specifies activities as the negative log of the 50 inhibitory concentration (molar). "IC50MicroM" specifies activities as the 50 growth inhibitory concentration (micromolar). |
onlyCellMinerExps |
a logical value indicating whether to only return experimental data included in CellMiner (default=TRUE). |
Value
a matrix with activity data from each experiment associated with a compound organized along the rows.
Examples
1 2 3 | nscStr <- "609699"
actData <- getDrugActivityRepeatData(nscStr, concFormat='NegLogGI50M')
actData <- getDrugActivityRepeatData(nscStr, concFormat='IC50MicroM')
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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