Files in rcellminer
rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

LICENSE
NAMESPACE
NEWS
README.md
DESCRIPTION
build/vignette.rds
tests/testthat.R tests/testthat/test_getMolDataMatrices.R tests/testthat/test_passRuleOf5FromNsc.R tests/testthat/test_getActivityRangeStats.R tests/testthat/test_MolPharmTypes.R tests/testthat/test_getNumDrugActivityRepeats.R tests/testthat/test_selectCorrelatedRows.R tests/testthat/test_isPublic.R tests/testthat/test_plotDrugSets.R tests/testthat/test_restrictFeatureMat.R tests/testthat/test_getMedSenLineActivity.R tests/testthat/test_hasMoa.R tests/testthat/test_searchForNscs.R tests/testthat/test_getNumMissingLines.R tests/testthat/test_getDrugActivityRange.R tests/testthat/test_getBinaryMutationData.R tests/testthat/test_rcellminer.R tests/testthat/test_selectCorrelatedRowsFromMatrices.R tests/testthat/test_getColumnQuantiles.R tests/testthat/test_compareFingerprints.R tests/testthat/test_patternComparison.R tests/testthat/test_plotStructuresFromNscs.R tests/testthat/test_getFingerprintList.R tests/testthat/test_getDrugName.R tests/testthat/test_getMoaToCompounds.R tests/testthat/test_getMoaStr.R tests/testthat/test_plotStructures.R tests/testthat/test_crossCors.R tests/testthat/test_getDrugActivityRepeatData.R tests/testthat/test_getRsd.R tests/testthat/test_plotDrugActivityRepeats.R tests/testthat/test_getDrugActivityData.R tests/testthat/test_getFeatureDataFromMatList.R tests/testthat/test_removeMolDataType.R tests/testthat/test_loadNciColorSet.R tests/testthat/test_getDrugMoaList.R tests/testthat/test_getMolDataType.R tests/testthat/test_plotCellMiner.R tests/testthat/test_getMinDrugActivityRepeatCor.R tests/testthat/test_getSmiles.R tests/testthat/test_passRuleOf5.R
inst/CITATION
inst/shinyCompareStructures/ui.R inst/shinyCompareStructures/server.R inst/doc/rcellminerUsage.Rmd
inst/doc/rcellminerUsage.html
inst/doc/rcellminerUsage.R inst/shinyReprodPlots/ui.R inst/shinyReprodPlots/server.R inst/shinyTutorialHeatmap/ui.R inst/shinyTutorialHeatmap/server.R inst/shinyTutorialHeatmap/www/help.md inst/shinyTemplate/genericTabs.R inst/shinyTemplate/ui.R
inst/shinyTemplate/config.json
inst/shinyTemplate/server.R inst/shinyTemplate/functions.R inst/shinyTemplate/www/help.md inst/shinyTemplate/www/about.md inst/shinyTutorial/ui.R inst/shinyTutorial/server.R inst/shinyTutorial/www/help.md inst/shinyComparePlots/modal.R inst/shinyComparePlots/dataLoadingFunctions.R inst/shinyComparePlots/global.R inst/shinyComparePlots/buildSrcContent.R inst/shinyComparePlots/server.R
inst/shinyComparePlots/configMeta.json
inst/shinyComparePlots/appConfig.json
inst/shinyComparePlots/config.json
inst/shinyComparePlots/appUtils.R inst/shinyComparePlots/regressionModels.R inst/shinyComparePlots/ui.R inst/shinyComparePlots/www/files/about.md inst/shinyComparePlots/www/files/help.md
inst/shinyComparePlots/www/files/rcellminer_screenshot_anno.png
inst/shinyComparePlots/www/js/showLoading.js
inst/shinyComparePlots/www/js/google-analytics.js
inst/shinyComparePlots/www/js/parse_input.js
inst/shinyComparePlots/www/css/hacks.css
inst/shinyComparePlots/www/css/tooltip.css
inst/extdata/Drug_MOA_Key.txt
inst/shinyFormulas/ui.R inst/shinyFormulas/server.R
vignettes/shinyCompareStructures.png
vignettes/shinyReprodPlots.png
vignettes/shinyComparePlots.png
vignettes/rcellminerUsage.Rmd
data/Drug_MOA_Key.RData
data/datalist
data/fingerprintList.RData
R/getDrugActivityRange.R R/AllGenerics.R R/getNumMissingLines.R R/getActivityRangeStats.R R/getNumDrugActivityRepeats.R R/passRuleOf5.R R/parCorPatternComparison.R R/plotDrugActivityRepeats.R R/plotDrugSets.R R/loadNciColorSet.R R/loadCellminerPlotInfo.R R/runShinyApp.R R/getColumnQuantiles.R R/MolData-methods.R R/removeMolDataType.R R/DrugData-methods.R R/MolData-class.R R/compareFingerprints.R R/getMolDataMatrices.R R/getBinaryMutationData.R R/getRsd.R R/passRuleOf5FromNsc.R R/rcdkplot.R R/rcellminer.R R/getMedSenLineActivity.R R/searchForNscs.R R/DrugData-class.R R/plotStructuresFromNscs.R R/getDrugName.R R/Drug_MOA_Key.R R/getMoaToCompounds.R R/selectCorrelatedRows.R R/runShinyCompareStructures.R R/restrictFeatureMat.R R/getMinDrugActivityRepeatCor.R R/getSmiles.R R/patternComparison.R R/runShinyComparePlots.R R/isPublic.R R/plotCellMiner2D.R R/plotStructures.R R/selectCorrelatedRowsFromMatrices.R R/hasMoa.R R/getDrugActivityRepeatData.R R/getFingerprintList.R R/rowCors.R R/getFeatureDataFromMatList.R R/dataDocumentation.R R/crossCors.R R/getMoaStr.R R/plotCellMiner.R R/getDrugMoaList.R R/runShinyCompoundBrowser.R R/getMolDataType.R R/getDrugActivityData.R man/getAllFeatureData.Rd man/removeMolDataType.Rd man/Drug_MOA_Key.Rd man/getFeatureAnnot-DrugData-method.Rd man/sub-sub-MolData-method.Rd man/crossCors.Rd man/DrugData-class.Rd man/searchForNscs.Rd man/cmVersion.Rd man/plotDrugSets.Rd man/getDrugActivityRepeatData.Rd man/getNumDrugActivityRepeats.Rd man/getColumnQuantiles.Rd man/getMedSenLineActivity.Rd man/getActivityRangeStats.Rd man/getFingerprintList.Rd man/selectCorrelatedRows.Rd man/initialize-MolData-method.Rd man/getESetList.Rd man/getSampleData-MolData-method.Rd man/getSampleData.Rd man/crossCorsSpearman.Rd man/getFeatureDataFromMatList.Rd man/getAct.Rd man/compareFingerprints.Rd man/getRsd.Rd man/getDrugActivityRange.Rd man/patternComparison.Rd man/passRuleOf5.Rd man/runShinyCompareStructures.Rd man/initialize-DrugData-method.Rd man/getFeatureAnnot.Rd man/getRepeatAct-DrugData-method.Rd man/runShinyApp.Rd man/getMoaToCompounds.Rd man/restrictFeatureMat.Rd man/getMoaStr.Rd man/getDrugName.Rd man/getBinaryMutationData.Rd man/plotDrugActivityRepeats.Rd man/getDrugMoaList.Rd man/plotStructuresFromNscs.Rd man/DrugData-eSet-eSet-MIAxE-method.Rd man/fingerprintList.Rd man/getAct-DrugData-method.Rd man/selectCorrelatedRowsFromMatrices.Rd man/getNumMissingLines.Rd man/getSampleData-DrugData-method.Rd man/getAllFeatureData-MolData-method.Rd man/isPublic.Rd man/getSmiles.Rd man/loadNciColorSet.Rd man/getMolDataMatrices.Rd man/rowCors.Rd man/getFeatureAnnot-MolData-method.Rd man/MolData.Rd man/DrugData.Rd man/plotCellMiner2D.Rd man/sub-subset-MolData-method.Rd man/runShinyCompoundBrowser.Rd man/parCorPatternComparison.Rd man/runShinyComparePlots.Rd man/getRepeatAct.Rd man/getESetList-MolData-method.Rd man/plotCellMiner.Rd man/rcdkplot.Rd man/elNetMolDataNCI60.Rd man/plotStructures.Rd man/loadCellminerPlotInfo.Rd man/MolData-class.Rd man/passRuleOf5FromNsc.Rd man/MolData-list-MIAxE-method.Rd man/getMinDrugActivityRepeatCor.Rd man/hasMoa.Rd man/getMolDataType.Rd man/getDrugActivityData.Rd man/drugDB.Rd
rcellminer documentation built on Nov. 17, 2017, 9:43 a.m.