Files in rcellminer
rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

DESCRIPTION
NAMESPACE
NEWS
R
R/AllGenerics.R R/DrugData-class.R R/DrugData-methods.R R/Drug_MOA_Key.R R/MolData-class.R R/MolData-methods.R R/compareFingerprints.R R/crossCors.R R/dataDocumentation.R R/getActivityRangeStats.R R/getBinaryMutationData.R R/getColumnQuantiles.R R/getDrugActivityData.R R/getDrugActivityRange.R R/getDrugActivityRepeatData.R R/getDrugMoaList.R R/getDrugName.R R/getFeatureDataFromMatList.R R/getFingerprintList.R R/getMedSenLineActivity.R R/getMinDrugActivityRepeatCor.R R/getMoaStr.R R/getMoaToCompounds.R R/getMolDataMatrices.R R/getMolDataType.R R/getNumDrugActivityRepeats.R R/getNumMissingLines.R R/getRsd.R R/getSmiles.R R/hasMoa.R R/isPublic.R R/loadCellminerPlotInfo.R R/loadNciColorSet.R R/passRuleOf5.R R/passRuleOf5FromNsc.R R/patternComparison.R R/plotCellMiner.R R/plotDrugActivityRepeats.R R/plotDrugSets.R R/plotStructures.R R/plotStructuresFromNscs.R R/rcdkplot.R R/rcellminer.R R/removeMolDataType.R R/restrictFeatureMat.R R/rowCors.R R/runShinyApp.R R/runShinyComparePlots.R R/runShinyCompareStructures.R R/runShinyCompoundBrowser.R R/searchForNscs.R R/selectCorrelatedRows.R R/selectCorrelatedRowsFromMatrices.R
build
build/vignette.rds
data
data/Drug_MOA_Key.RData
data/datalist
data/fingerprintList.RData
inst
inst/CITATION
inst/doc
inst/doc/rcellminerUsage.R inst/doc/rcellminerUsage.Rmd
inst/doc/rcellminerUsage.html
inst/extdata
inst/extdata/Drug_MOA_Key.txt
inst/shinyComparePlots
inst/shinyComparePlots/config.json
inst/shinyComparePlots/config.json.orig
inst/shinyComparePlots/functions.R inst/shinyComparePlots/server.R inst/shinyComparePlots/ui.R
inst/shinyComparePlots/www
inst/shinyComparePlots/www/files
inst/shinyComparePlots/www/files/about.md inst/shinyComparePlots/www/files/help.md
inst/shinyComparePlots/www/js
inst/shinyComparePlots/www/js/google-analytics.js
inst/shinyComparePlots/www/js/parse_input.js
inst/shinyCompareStructures
inst/shinyCompareStructures/server.R inst/shinyCompareStructures/ui.R
inst/shinyFormulas
inst/shinyFormulas/server.R inst/shinyFormulas/ui.R
inst/shinyReprodPlots
inst/shinyReprodPlots/server.R inst/shinyReprodPlots/ui.R
inst/shinyTemplate
inst/shinyTemplate/config.json
inst/shinyTemplate/functions.R inst/shinyTemplate/genericTabs.R inst/shinyTemplate/server.R inst/shinyTemplate/ui.R
inst/shinyTutorial
inst/shinyTutorial/server.R inst/shinyTutorial/ui.R
inst/shinyTutorial/www
inst/shinyTutorial/www/help.md
inst/shinyTutorialHeatmap
inst/shinyTutorialHeatmap/server.R inst/shinyTutorialHeatmap/ui.R
inst/shinyTutorialHeatmap/www
inst/shinyTutorialHeatmap/www/help.md
inst/tests
inst/tests/test_MolPharmTypes.R inst/tests/test_compareFingerprints.R inst/tests/test_crossCors.R inst/tests/test_getActivityRangeStats.R inst/tests/test_getBinaryMutationData.R inst/tests/test_getColumnQuantiles.R inst/tests/test_getDrugActivityData.R inst/tests/test_getDrugActivityRange.R inst/tests/test_getDrugActivityRepeatData.R inst/tests/test_getDrugMoaList.R inst/tests/test_getDrugName.R inst/tests/test_getFeatureDataFromMatList.R inst/tests/test_getFingerprintList.R inst/tests/test_getMedSenLineActivity.R inst/tests/test_getMinDrugActivityRepeatCor.R inst/tests/test_getMoaStr.R inst/tests/test_getMoaToCompounds.R inst/tests/test_getMolDataMatrices.R inst/tests/test_getMolDataType.R inst/tests/test_getNumDrugActivityRepeats.R inst/tests/test_getNumMissingLines.R inst/tests/test_getRsd.R inst/tests/test_getSmiles.R inst/tests/test_hasMoa.R inst/tests/test_isPublic.R inst/tests/test_loadNciColorSet.R inst/tests/test_passRuleOf5.R inst/tests/test_passRuleOf5FromNsc.R inst/tests/test_patternComparison.R inst/tests/test_plotCellMiner.R inst/tests/test_plotDrugActivityRepeats.R inst/tests/test_plotDrugSets.R inst/tests/test_plotStructures.R inst/tests/test_plotStructuresFromNscs.R inst/tests/test_rcellminer.R inst/tests/test_removeMolDataType.R inst/tests/test_restrictFeatureMat.R inst/tests/test_searchForNscs.R inst/tests/test_selectCorrelatedRows.R inst/tests/test_selectCorrelatedRowsFromMatrices.R
man
man/DrugData-class.Rd man/DrugData-eSet-eSet-MIAxE-method.Rd man/DrugData.Rd man/Drug_MOA_Key.Rd man/MolData-class.Rd man/MolData-list-MIAxE-method.Rd man/MolData.Rd man/cmVersion.Rd man/compareFingerprints.Rd man/crossCors.Rd man/crossCorsSpearman.Rd man/drugDB.Rd man/elNetMolDataNCI60.Rd man/fingerprintList.Rd man/getAct-DrugData-method.Rd man/getAct.Rd man/getActivityRangeStats.Rd man/getAllFeatureData-MolData-method.Rd man/getAllFeatureData.Rd man/getBinaryMutationData.Rd man/getColumnQuantiles.Rd man/getDrugActivityData.Rd man/getDrugActivityRange.Rd man/getDrugActivityRepeatData.Rd man/getDrugMoaList.Rd man/getDrugName.Rd man/getESetList-MolData-method.Rd man/getESetList.Rd man/getFeatureAnnot-DrugData-method.Rd man/getFeatureAnnot-MolData-method.Rd man/getFeatureAnnot.Rd man/getFeatureDataFromMatList.Rd man/getFingerprintList.Rd man/getMedSenLineActivity.Rd man/getMinDrugActivityRepeatCor.Rd man/getMoaStr.Rd man/getMoaToCompounds.Rd man/getMolDataMatrices.Rd man/getMolDataType.Rd man/getNumDrugActivityRepeats.Rd man/getNumMissingLines.Rd man/getRepeatAct-DrugData-method.Rd man/getRepeatAct.Rd man/getRsd.Rd man/getSampleData-DrugData-method.Rd man/getSampleData-MolData-method.Rd man/getSampleData.Rd man/getSmiles.Rd man/hasMoa.Rd man/initialize-DrugData-method.Rd man/initialize-MolData-method.Rd man/isPublic.Rd man/loadCellminerPlotInfo.Rd man/loadNciColorSet.Rd man/passRuleOf5.Rd man/passRuleOf5FromNsc.Rd man/patternComparison.Rd man/plotCellMiner.Rd man/plotDrugActivityRepeats.Rd man/plotDrugSets.Rd man/plotStructures.Rd man/plotStructuresFromNscs.Rd man/rcdkplot.Rd man/removeMolDataType.Rd man/restrictFeatureMat.Rd man/rowCors.Rd man/runShinyApp.Rd man/runShinyComparePlots.Rd man/runShinyCompareStructures.Rd man/runShinyCompoundBrowser.Rd man/searchForNscs.Rd man/selectCorrelatedRows.Rd man/selectCorrelatedRowsFromMatrices.Rd man/sub-sub-MolData-method.Rd man/sub-subset-MolData-method.Rd
rcellminer.Rproj
tests
tests/runTests.R
vignettes
vignettes/rcellminerUsage.Rmd
vignettes/shinyComparePlots.png
vignettes/shinyCompareStructures.png
vignettes/shinyReprodPlots.png
rcellminer documentation built on May 31, 2017, 11:30 a.m.