API for readat
Functionality to Read and Manipulate SomaLogic ADAT files

Global functions
WideSomaLogicData Man page Source code
WideSomaLogicDataAttributes Man page
[.WideSomaLogicData Man page
aptamers Man page
as.ExpressionSet Man page Source code
as.ExpressionSet.WideSomaLogicData Man page Source code
as.MSnSet Man page Source code
as.MSnSet.WideSomaLogicData Man page Source code
as.SummarizedExperiment Man page Source code
as.SummarizedExperiment.WideSomaLogicData Man page Source code
as.matrix.WideSomaLogicData Man page Source code
assert_all_are_entrez_gene_ids Source code
assert_all_are_entrez_gene_symbols Source code
assert_all_are_uniprot_ids Source code
checkEntrezGeneIds Source code
checkEntrezGeneSymbols Source code
checkUniprotIds Source code
chromosomalPositions Man page
colnamesStartWithSeqId Man page Source code
convertSeqIdToAptamer Man page Source code
createSampleSubmission Man page Source code
defunct Man page
ensemblIds Man page
extractSampleData Man page Source code
fixCharacterColClasses Source code
fixFailFlag Source code
fixListColClasses Source code
fixMultiValueSeparators Source code
getChecksum Man page Source code
getChromosomalPositions Man page Source code
getData Source code
getEnsemblIds Man page Source code
getGoBiologicalProcesses Man page Source code
getGoCellularComponents Man page Source code
getGoMolecularFunctions Man page Source code
getIntensities Man page Source code
getIntensities.LongSomaLogicData Man page Source code
getIntensities.WideSomaLogicData Man page Source code
getKeggDefinitions Man page Source code
getKeggModules Man page Source code
getKeggPathways Man page Source code
getMetadata Man page Source code
getNFields Source code
getPfam Man page Source code
getSampleData Man page Source code
getSampleData.LongSomaLogicData Man page Source code
getSampleData.WideSomaLogicData Man page Source code
getSampleIdVar Man page Source code
getSequenceData Man page Source code
getSequencesWithLargestBetweenGroupVariation Man page Source code
getSequencesWithLargestBetweenGroupVariation.LongSomaLogicData Source code
getUniProtKeywords Man page Source code
goBiologicalProcess Man page
goCellularComponent Man page
goMolecularFunction Man page
ignoreHce Source code
isPass Man page Source code
isSomaEset Man page Source code
is_entrez_gene_id Source code
is_entrez_gene_symbol Source code
is_uniprot_id Source code
keggDefinitions Man page
keggDefinitions1129 Man page
keggModules Man page
keggModules1129 Man page
keggPathways Man page
keggPathways1129 Man page
list_depth Source code
list_names Source code
list_names0 Source code
list_to_data.frame Source code
melt.WideSomaLogicData Man page Source code
orderPlatePosition Man page Source code
pfam Man page
readAdat Man page Source code
readComments Man page Source code
readControls Man page Source code
readFirstChar Man page Source code
readHeader Source code
readMetadata Source code
readSampleAndIntensityData Source code
readSamples Man page Source code
readSequenceData Source code
readSlides Man page Source code
readat-defunct Man page
removeFailures Source code
removeNonSamples Source code
setChecksum Man page Source code
setIntensities Man page Source code
setMetadata Man page Source code
setSampleData Man page Source code
setSequenceData Man page Source code
sfread Source code
soma2eset Man page Source code
suppressSomeFeedback Source code
uniprotKeywords Man page
updateFields Source code
valuesOf Source code
writeSampleSubmissionForm Man page Source code
readat documentation built on May 2, 2018, 2:51 a.m.