Read the paper in BMC Bioinformatics: readat: An R package for reading and working with SomaLogic ADAT files
To install the package, you first need the devtools package.
Then you can install the readat package using
readAdat let's you import data from the SomaLogic ADAT file format. The
result is stored in an object of class
WideSomaData. This is a data.table
with one sample per row, and includes both the intensities and sample metadata.
The object also has an attribute named
sequenceData that contains a data.table
of sequence metadata. There are also attributes for experiment metadata and a
getChecksum provide shortcuts to access
There is a
melt method for
WideSomaData that converts the object to
LongSomaData format, which is a data.table with one intensity per row.
soma2eset converts an object of class
WideSomaData to a
You can retrieve additional annotations by SomaLogic Sequence ID uisng
getSequencesWithLargestBetweenGroupVariation find the sequences with the
largest amount of variation between specified sample groups.
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