README.md
In recountmethylation: Access and Analyze DNA Methylation Array Databases

Authors

Sean K. Maden, Reid F. Thompson, Kasper D. Hansen, Abhinav Nellore

Manuscript

Sean K. Maden, Reid F. Thompson, Kasper D. Hansen, Abhinav Nellore. "Human methylome variation across Infinium 450K raw data on the Gene Expression Omnibus." 2019 (preprint in preparation for submission).

Installation and data access

From an active R session, install this package from Bioconductor using:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("recountmethylation")

You may alternatively install this package from GitHub using:

require(devtools); install_github("metamaden/recountmethylation").

Package disclaimer

Databases accessed with recountmethylation contain data from GEO (ncbi.nlm.nih.gov/geo/), a live public database where alterations to online records can cause discrepancies with stored data over time. We cannot guarantee the accuracy of stored data, and advise users cross-check their findings with latest available records.