servermatrix: servermatrix

In recountmethylation: Access and Analyze DNA Methylation Array Databases

Description

Called by get_rmdl() to get a matrix of database files and file info from the server. Verifies valid versions and timestamps in filenames, and that h5se directories contain both an assays and an se.rds file.

Usage

servermatrix(
  dn,
  sslver = FALSE,
  printmatrix = TRUE,
  verbose = FALSE,
  url = "https://recount.bio/data/",
  recursive = TRUE
)

Arguments

dn	Server data returned from RCurl.
sslver	Whether to use SSL certificate authentication for server connection (default FALSE).
printmatrix	Whether to print the data matrix to console (default TRUE).
verbose	Whether to show verbose messages (default FALSE).
url	Server website url.
recursive	Whether to recursively grab file sizes for h5se objects (default TRUE).

Value

dm matrix of server files and file metadata

See Also

get_rmdl

Examples

dn <- RCurl::getURL("https://recount.bio/data/", 
.opts = list(ssl.verifypeer = FALSE))
sm <- servermatrix(dn)

recountmethylation documentation built on Nov. 8, 2020, 4:59 p.m.