API for regioneR
Association analysis of genomic regions based on permutation tests
| Global functions | |
|---|---|
| Curry | Source code |
| characterToBSGenome | Man page |
| circularRandomizeRegions | Man page Source code |
| commonRegions | Man page Source code |
| copySeqLevels | Source code |
| coverageToGRanges | Source code |
| createFunctionsList | Man page Source code |
| createRandomRegions | Man page Source code |
| emptyCacheRegioneR | Man page Source code |
| extendRegions | Man page Source code |
| fileToGRanges | Source code |
| filterChromosomes | Man page Source code |
| firstNonCommentLine | Source code |
| getChromosomesByOrganism | Man page Source code |
| getGenome | Man page |
| getGenomeAndMask | Man page |
| getMask | Man page |
| getSeparator | Source code |
| hasHeader | Source code |
| joinRegions | Man page Source code |
| listChrTypes | Man page Source code |
| localZScore | Man page Source code |
| maskFromBSGenome | Man page |
| meanDistance | Man page Source code |
| meanInRegions | Man page Source code |
| mergeRegions | Man page Source code |
| numOverlaps | Man page Source code |
| overlapGraphicalSummary | Man page Source code |
| overlapPermTest | Man page Source code |
| overlapRegions | Man page Source code |
| permTest | Man page Source code |
| plot.localZScoreResults | Man page Source code |
| plot.localZScoreResultsList | Man page Source code |
| plot.permTestResults | Man page Source code |
| plot.permTestResultsList | Man page Source code |
| plotRegions | Man page Source code |
| print.permTestResults | Man page Source code |
| private_randomizeRegions | Source code |
| randomizeFastWithNoOverlappingControl | Source code |
| randomizeRegions | Man page Source code |
| recomputePermTest | Man page Source code |
| removeOverlapping | Source code |
| resampleRegions | Man page Source code |
| setGenomeToGRanges | Source code |
| spinChromosome | Source code |
| splitRegions | Man page Source code |
| subtractRegions | Man page Source code |
| summary.permTestResults | Man page Source code |
| summary.permTestResultsList | Man page Source code |
| toDataframe | Man page Source code |
| toGRanges | Man page Source code |
| uniqueRegions | Man page Source code |
