recomputePermTest: Recompute Permutation Test
In regioneR: Association analysis of genomic regions based on permutation tests

Description Usage Arguments Value See Also Examples

Recomputes the permutation test changing the alternative hypotesis

1	recomputePermTest(ptr)

ptr

an object of class permTestResults

A list of class permTestResults containing the same components as permTest results.

permTest

A <- createRandomRegions(nregions=10, length.mean=1000000)

B <- createRandomRegions(nregions=10, length.mean=1000000)

resPerm <- permTest(A=A, B=B, ntimes=5, alternative="less", genome="hg19", evaluate.function=meanDistance, randomize.function=randomizeRegions)

plot(resPerm)