toDataframe: toDataframe
In regioneR: Association analysis of genomic regions based on permutation tests
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
Transforms a GRanges object or a data.framecontaining a region set into a data.frame.
Usage
1
toDataframe(A, stranded=FALSE)
Arguments
A
a GRanges object.
stranded
(only used when A is a GRanges object) a logical indicating whether a column with the strand information have to be added to the result (Defaults to FALSE)
Details
If the oject is of class data.frame, it will be returned untouched.
Value
A data.frame with the regions in A. If A was a GRanges object, the output will include any metadata present in A.
See Also
Examples
1
2
3
4
5
A <- data.frame(chr=1, start=c(1, 15, 24), end=c(10, 20, 30), x=c(1,2,3), y=c("a", "b", "c"))
A2 <- toGRanges(A)
toDataframe(A2)
regioneR documentation built on Nov. 8, 2020, 5 p.m.
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Description Usage Arguments Details Value See Also Examples
Description
Transforms a GRanges object or a data.framecontaining a region set into a data.frame.
Usage
1 | toDataframe(A, stranded=FALSE)
|
Arguments
A |
a |
stranded |
(only used when A is a |
Details
If the oject is of class data.frame, it will be returned untouched.
Value
A data.frame with the regions in A. If A was a GRanges object, the output will include any metadata present in A.
See Also
Examples
1 2 3 4 5 | A <- data.frame(chr=1, start=c(1, 15, 24), end=c(10, 20, 30), x=c(1,2,3), y=c("a", "b", "c"))
A2 <- toGRanges(A)
toDataframe(A2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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