commonRegions: Common Regions

In regioneR: Association analysis of genomic regions based on permutation tests

Description

Returns the regions that are common in two region sets, its intersection.

Usage

commonRegions(A, B)

Arguments

A	a region set in any of the accepted formats by toGRanges (GenomicRanges, data.frame, etc...)
B	a region set in any of the accepted formats by toGRanges (GenomicRanges, data.frame, etc...)

Value

It returns a GenomicRanges object with the regions present in both region sets.

Note

All metadata (additional columns in the region set in addition to chromosome, start and end) will be ignored and not present in the returned region set.

See Also

plotRegions, toDataframe, toGRanges, subtractRegions, splitRegions, extendRegions, joinRegions, mergeRegions, overlapRegions

Examples

A <- data.frame("chr1", c(1, 10, 20, 30), c(12, 13, 28, 40))

B <- data.frame("chr1", 25, 35)

commons <- commonRegions(A, B)

plotRegions(list(A, B, commons), chromosome="chr1", regions.labels=c("A", "B", "common"), regions.colors=3:1)

regioneR documentation built on Nov. 8, 2020, 5 p.m.