getChromosomesByOrganism: getChromosomesByOrganism

In regioneR: Association analysis of genomic regions based on permutation tests

Description

Function to obtain a list of organisms with their canonical and (when applicable) the autosomal chromosome names. This function is not usually used by the end user directly but through the filterChromosomes function.

Usage

getChromosomesByOrganism()

Value

a list with the organism as keys and the list of available chromosome sets as values

See Also

getGenome, filterChromosomes

Examples

chrsByOrg <- getChromosomesByOrganism() 
chrsByOrg[["hg"]]
chrsByOrg[["hg"]][["autosomal"]]

regioneR documentation built on Nov. 8, 2020, 5 p.m.