Files in ribosomeProfilingQC
Ribosome Profiling Quality Control
NEWS.md
README.md
ribosomeProfilingQC documentation built on March 13, 2021, 2:01 a.m.
NAMESPACE
DESCRIPTION
LICENSE
R/summaryReadsLength.R
R/plotFrameDensity.R
R/getFPKM.R
R/getORFscore.R
R/countReads.R
R/plotSpliceEvent.R
R/frameCounts.R
R/cvgd.R
R/PAmotif.R
R/codonUsage.R
R/getPsiteCoordinates.R
R/normByRUVs.R
R/readsEndPlot.R
R/coverageRates.R
R/readsDistribution.R
R/spliceEvent.R
R/ribosomeReleaseScore.R
R/coverageDepth.R
R/estimatePsite.R
R/plotTranscript.R
R/shiftReadsByFrame.R
R/plotDistance2Codon.R
R/readsLenToKeep.R
R/strandPlot.R
R/prepareCDS.R
R/simulateRPF.R
R/plotTE.R
R/filterCDS.R
R/ggBar.R
R/metaPlot.R
R/FLOSS.R
R/assignReadingFrame.R
R/translationalEfficiency.R
inst/doc/ribosomeProfilingQC.html
inst/doc/ribosomeProfilingQC.R
inst/doc/ribosomeProfilingQC.Rmd
inst/extdata/RPF.WT.1.bam.bai
inst/extdata/RPF.KD1.2.bam
inst/extdata/Danio_rerio.GRCz10.91.chr1.gtf.gz
inst/extdata/mRNA.KD1.2.bam
inst/extdata/RPF.WT.2.bam
inst/extdata/samplePc.rds
inst/extdata/RPF.WT.2.bam.bai
inst/extdata/mRNA.KD1.1.bam
inst/extdata/mRNA.WT.2.bam.bai
inst/extdata/mRNA.WT.2.bam
inst/extdata/mRNA.KD1.2.bam.bai
inst/extdata/danrer10.annotations.rds
inst/extdata/RPF.KD1.1.bam
inst/extdata/mRNA.WT.1.bam
inst/extdata/RPF.KD1.1.bam.bai
inst/extdata/RPF.chr1.bad.bam.bai
inst/extdata/RPF.WT.1.bam
inst/extdata/cnts.rds
inst/extdata/RPF.KD1.2.bam.bai
inst/extdata/mRNA.WT.1.bam.bai
inst/extdata/mRNA.KD1.1.bam.bai
inst/extdata/RPF.chr1.bad.bam
inst/extdata/CDS.rds
build/vignette.rds
tests/runTests.R
tests/testthat/test_shiftReads.R
tests/testthat/test_estimatePsite.R
tests/testthat/test_getPsiteCoordinates.R
tests/testthat/test_readsLenToKeep.R
tests/testthat/test_frameCounts.R
tests/testthat/test_prepareCDS.R
tests/testthat/test_filterCDS.R
vignettes/bibliography.bib
vignettes/nature.csl
vignettes/schematic.ribosome.prof.jpg
vignettes/activeExpression.jpg
vignettes/ribosomeProfilingQC.Rmd
vignettes/TSSdocking.png
man/getFPKM.Rd
man/plotTranscript.Rd
man/strandPlot.Rd
man/getPsiteCoordinates.Rd
man/spliceEvent.Rd
man/normByRUVs.Rd
man/assignReadingFrame.Rd
man/PAmotif.Rd
man/countReads.Rd
man/readsEndPlot.Rd
man/plotFrameDensity.Rd
man/readsLenToKeep.Rd
man/plotDistance2Codon.Rd
man/plotTE.Rd
man/filterCDS.Rd
man/getORFscore.Rd
man/codonUsage.Rd
man/FLOSS.Rd
man/prepareCDS.Rd
man/plotSpliceEvent.Rd
man/metaPlot.Rd
man/coverageDepth.Rd
man/summaryReadsLength.Rd
man/cvgd-class.Rd
man/frameCounts.Rd
man/readsDistribution.Rd
man/ggBar.Rd
man/simulateRPF.Rd
man/shiftReadsByFrame.Rd
man/estimatePsite.Rd
man/translationalEfficiency.Rd
man/ribosomeReleaseScore.Rd
man/coverageRates.Rd
