NEWS.md

In ribosomeProfilingQC: Ribosome Profiling Quality Control

CHANGES IN VERSION 1.2.1

• fix the issue in shiftReads for reads width is smaller than shift range.

CHANGES IN VERSION 1.1.6

• fix the issue in shiftReads for reads width and readsEndPlot for seqlevels.

CHANGES IN VERSION 1.1.5

• Update documentation about the R version requirement.

CHANGES IN VERSION 1.1.4

• Update authorship.

CHANGES IN VERSION 1.1.3

• Fix the error "CIGAR is empty after qnarrowing".

CHANGES IN VERSION 1.1.2

• update vignette to fix the typos.
• update plotTranscript to give more informative warning message.

CHANGES IN VERSION 1.1.1

• update vignette by adding background colors for better understanding the pipeline.

CHANGES IN VERSION 0.99.91

• change Y-axis lable from Frequence to Frequency for plot Distance2Codon.
• update vignette.

CHANGES IN VERSION 0.99.9

• reset the test_estimatePsite.

CHANGES IN VERSION 0.99.8

• decrease the testing time.

CHANGES IN VERSION 0.99.6

• fix the warning missing link of plot in plotTE.

CHANGES IN VERSION 0.99.5

• update ggBar function to accept more colors.
• update readsEndPlot function with shift parameter.
• update plotDistance2Codon function with a range of plot window
• add codonUsage function.

CHANGES IN VERSION 0.99.4

• update the description in DESCRIPTION.
• update help files.

CHANGES IN VERSION 0.99.3

• change the link from AtomicList to AtomicList-class and RUVs-methods to RUVs.
• shorter lines < 80 characters.
• spead up coverageDepth

CHANGES IN VERSION 0.99.2

• remove .DS_Store

CHANGES IN VERSION 0.99.1

• decrease the size of the package
• simplify and add parameter anchor for the estimatePsite function.
• add parameter normByLibSize for function translationalEfficiency
• add more test files.
• update documentations.

CHANGES IN VERSION 0.99.0

• Submit to Bioconductor.

CHANGES IN VERSION 0.0.6

• Remove sapply.

CHANGES IN VERSION 0.0.1

• Create the package.

ribosomeProfilingQC documentation built on March 13, 2021, 2:01 a.m.