savR: Parse and analyze Illumina SAV files

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

AuthorR. Brent Calder
Date of publicationNone
MaintainerR. Brent Calder <brent.calder@einstein.yu.edu>
LicenseAGPL-3
Version1.12.0
https://github.com/bcalder/savR

View on Bioconductor

Files in this package

savR/CHANGES
savR/DESCRIPTION
savR/NAMESPACE
savR/R
savR/R/AllClasses.R savR/R/AllGenerics.R savR/R/SavR-accessors.R savR/R/savR-methods.R savR/R/savR-package.R savR/R/show-methods.R
savR/README.md
savR/build
savR/build/vignette.rds
savR/inst
savR/inst/doc
savR/inst/doc/savR.R
savR/inst/doc/savR.Rnw
savR/inst/doc/savR.pdf
savR/inst/extdata
savR/inst/extdata/MiSeq
savR/inst/extdata/MiSeq/InterOp
savR/inst/extdata/MiSeq/InterOp/CorrectedIntMetricsOut.bin
savR/inst/extdata/MiSeq/InterOp/ExtractionMetricsOut.bin
savR/inst/extdata/MiSeq/InterOp/QMetricsOut.bin
savR/inst/extdata/MiSeq/InterOp/TileMetricsOut.bin
savR/inst/extdata/MiSeq/RunInfo.xml
savR/man
savR/man/buildReports.Rd savR/man/clusterQualityGtN.Rd savR/man/clusters.Rd savR/man/correctedIntensities.Rd savR/man/cycles.Rd savR/man/directions.Rd savR/man/errorMetrics.Rd savR/man/extractionMetrics.Rd savR/man/flowcellLayout.Rd savR/man/illuminaFlowCellLayout-class.Rd savR/man/illuminaRead-class.Rd savR/man/location.Rd savR/man/pfBoxplot.Rd savR/man/pfClusters.Rd savR/man/plotFWHM.Rd savR/man/plotIntensity.Rd savR/man/plotQGT30.Rd savR/man/qualityHeatmap.Rd savR/man/qualityMetrics.Rd savR/man/reads.Rd savR/man/run.Rd savR/man/savCorrectedIntensityFormat-class.Rd savR/man/savData-class.Rd savR/man/savErrorFormat-class.Rd savR/man/savExtractionFormat-class.Rd savR/man/savFormat-class.Rd savR/man/savProject-class.Rd savR/man/savQualityFormat-class.Rd savR/man/savQualityFormatV5-class.Rd savR/man/savR-package.Rd savR/man/savR.Rd savR/man/savTileFormat-class.Rd savR/man/tileMetrics.Rd
savR/tests
savR/tests/testthat
savR/tests/testthat.R
savR/tests/testthat/test_accessors.R
savR/tests/testthat/test_load.R
savR/vignettes
savR/vignettes/savR.Rnw

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