tileMetrics: Get Tile Metrics

Description Usage Arguments Details Value References Examples

Description

Returns the Tile Metrics SAV data.

Usage

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tileMetrics(project)

## S4 method for signature 'savProject'
tileMetrics(project)

Arguments

project

SAV project

Details

Metrics for each tile are encoded in the following format:

cluster density: 100
PF cluster density: 101
number of clusters: 102
number of PF clusters: 103
phasing for read N: (200 + (N - 1) * 2)
prephasing for read N: (201 + (N - 1) * 2)
percent aligned for read N: (300 + N - 1)
control lane: 400
lane:

Lane number

tile:

Tile ID

code:

Code described above

value:

Value for code key

Value

sorted data.frame of tile metrics

References

Codes for Tile Metrics were obtained from the Python Illuminate package:
https://bitbucket.org/invitae/illuminate

Examples

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savR documentation built on May 2, 2018, 3:59 a.m.