correctedIntensities: Get Corrected Intensity data

Description Usage Arguments Details Value Examples

Description

Returns a data frame of corrected intensity data.

Usage

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correctedIntensities(project)

## S4 method for signature 'savProject'
correctedIntensities(project)

Arguments

project

SAV project

Details

lane:

Lane number


tile:

Tile ID


cycle:

Cycle number


avg_intensity:

Average intensity


avg_cor_[ACGT]:

Average corrected intensity of channel A, C, G, or T


avg_cor_called_[ACGT]:

Average corrected intensity for called clusters in channel A, C, G, or T


num_{none|[ACGT]}:

Number of called bases for no-call, A, C, G, or T


sig_noise:

Signal to noise ratio


Value

sorted data.frame of CI data.

Examples

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