clusterQualityGtN: Get the proportion of clusters over a specified quality...

Description Usage Arguments Examples

Description

Return the ratio of clusters with a quality score less than or equal to a specified value (n) for the requested lanes and cycles.

Usage

1
2
3
4
5
clusterQualityGtN(project, lane, cycle, n)

## S4 method for signature 'savProject,integer,integer,integer'
clusterQualityGtN(project, lane,
  cycle, n = 30L)

Arguments

project

SAV project

lane

lane(s) number

cycle

cycle(s) number

n

quality threshold

Examples

1
2
3
4
5
## Not run: 
example(savR)
clusterQualityGtN(fc, 1L, 25L, 30L)

## End(Not run)


Search within the savR package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.