clusterQualityGtN: Get the proportion of clusters over a specified quality...
In savR: Parse and analyze Illumina SAV files
Description
Usage
Arguments
Examples
Description
Return the ratio of clusters with a quality score less than or equal to
a specified value (n) for the requested lanes and cycles.
Usage
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clusterQualityGtN(project, lane, cycle, n)
## S4 method for signature 'savProject,integer,integer,integer'
clusterQualityGtN(project, lane,
cycle, n = 30L)
Arguments
project
SAV project
lane
lane(s) number
cycle
cycle(s) number
n
quality threshold
Examples
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## Not run:
example(savR)
clusterQualityGtN(fc, 1L, 25L, 30L)
## End(Not run)
savR documentation built on Nov. 8, 2020, 7:03 p.m.
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Description Usage Arguments Examples
Description
Return the ratio of clusters with a quality score less than or equal to a specified value (n) for the requested lanes and cycles.
Usage
1 2 3 4 5 | clusterQualityGtN(project, lane, cycle, n)
## S4 method for signature 'savProject,integer,integer,integer'
clusterQualityGtN(project, lane,
cycle, n = 30L)
|
Arguments
project |
SAV project |
lane |
lane(s) number |
cycle |
cycle(s) number |
n |
quality threshold |
Examples
1 2 3 4 5 | ## Not run:
example(savR)
clusterQualityGtN(fc, 1L, 25L, 30L)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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