API for savR
Parse and analyze Illumina SAV files

Global functions
addPosition Source code
buildReports Man page
buildReports,savProject,character-method Man page
buildReports,savProject,missing-method Man page
clusterQualityGtN Man page
clusterQualityGtN,savProject,integer,integer,integer Man page
clusterQualityGtN,savProject,integer,integer,integer-method Man page
clusters Man page
clusters,savProject,integer-method Man page
correctedIntensities Man page
correctedIntensities,savProject-method Man page
cycles Man page
cycles,savProject-method Man page
directions Man page
directions,savProject-method Man page
errorMetrics Man page
errorMetrics,savProject-method Man page
extractionMetrics Man page
extractionMetrics,savProject-method Man page
flowcellLayout Man page
flowcellLayout,savProject-method Man page
getFlowcellStats Source code
getFormatQGT30 Source code
getInterOpFilePath Source code
illuminaFlowCellLayout-class Man page
illuminaRead-class Man page
init Source code
location Man page
location,savProject-method Man page
parseBin Source code
parseBinData Source code
parsesavQualityFormatV5 Source code
pfBoxplot Man page
pfBoxplot,savProject-method Man page
pfClusters Man page
pfClusters,savProject,integer Man page
pfClusters,savProject,integer-method Man page
plotFWHM Man page
plotFWHM,savProject,integer,character-method Man page
plotFWHM,savProject,integer,missing-method Man page
plotFWHM,savProject,missing,character-method Man page
plotFWHM,savProject,missing,missing-method Man page
plotIntensity Man page
plotIntensity,savProject,integer,character-method Man page
plotIntensity,savProject,integer,missing-method Man page
plotIntensity,savProject,missing,character-method Man page
plotIntensity,savProject,missing,missing-method Man page
plotQGT30 Man page
plotQGT30,savProject,integer-method Man page
plotQGT30,savProject,missing-method Man page
qFormat Source code
qualityHeatmap Man page
qualityHeatmap,savProject,integer,integer,logical-method Man page
qualityHeatmap,savProject,numeric,numeric,missing-method Man page
qualityMetrics Man page
qualityMetrics,savProject-method Man page
readToCycles Source code
reads Man page
reads,savProject-method Man page
run Man page
run,savProject-method Man page
savCorrectedIntensityFormat-class Man page
savData-class Man page
savErrorFormat-class Man page
savExtractionFormat-class Man page
savFormat-class Man page
savProject-class Man page
savQualityFormat-class Man page
savQualityFormatV5-class Man page
savR Man page
savR,character-method Man page
savR,missing-method Man page
savR-package Man page
savTileFormat-class Man page
subsetSide Source code
testVersion Source code
tileMetrics Man page
tileMetrics,savProject-method Man page
savR documentation built on May 2, 2018, 3:59 a.m.