| addPosition |
Source code
|
| buildReports |
Man page
|
| buildReports,savProject,character-method |
Man page
|
| buildReports,savProject,missing-method |
Man page
|
| clusterQualityGtN |
Man page
|
| clusterQualityGtN,savProject,integer,integer,integer |
Man page
|
| clusterQualityGtN,savProject,integer,integer,integer-method |
Man page
|
| clusters |
Man page
|
| clusters,savProject,integer-method |
Man page
|
| correctedIntensities |
Man page
|
| correctedIntensities,savProject-method |
Man page
|
| cycles |
Man page
|
| cycles,savProject-method |
Man page
|
| directions |
Man page
|
| directions,savProject-method |
Man page
|
| errorMetrics |
Man page
|
| errorMetrics,savProject-method |
Man page
|
| extractionMetrics |
Man page
|
| extractionMetrics,savProject-method |
Man page
|
| flowcellLayout |
Man page
|
| flowcellLayout,savProject-method |
Man page
|
| getFlowcellStats |
Source code
|
| getFormatQGT30 |
Source code
|
| getInterOpFilePath |
Source code
|
| illuminaFlowCellLayout-class |
Man page
|
| illuminaRead-class |
Man page
|
| init |
Source code
|
| location |
Man page
|
| location,savProject-method |
Man page
|
| parseBin |
Source code
|
| parseBinData |
Source code
|
| parsesavQualityFormatV5 |
Source code
|
| pfBoxplot |
Man page
|
| pfBoxplot,savProject-method |
Man page
|
| pfClusters |
Man page
|
| pfClusters,savProject,integer |
Man page
|
| pfClusters,savProject,integer-method |
Man page
|
| plotFWHM |
Man page
|
| plotFWHM,savProject,integer,character-method |
Man page
|
| plotFWHM,savProject,integer,missing-method |
Man page
|
| plotFWHM,savProject,missing,character-method |
Man page
|
| plotFWHM,savProject,missing,missing-method |
Man page
|
| plotIntensity |
Man page
|
| plotIntensity,savProject,integer,character-method |
Man page
|
| plotIntensity,savProject,integer,missing-method |
Man page
|
| plotIntensity,savProject,missing,character-method |
Man page
|
| plotIntensity,savProject,missing,missing-method |
Man page
|
| plotQGT30 |
Man page
|
| plotQGT30,savProject,integer-method |
Man page
|
| plotQGT30,savProject,missing-method |
Man page
|
| qFormat |
Source code
|
| qualityHeatmap |
Man page
|
| qualityHeatmap,savProject,integer,integer,logical-method |
Man page
|
| qualityHeatmap,savProject,numeric,numeric,missing-method |
Man page
|
| qualityMetrics |
Man page
|
| qualityMetrics,savProject-method |
Man page
|
| readToCycles |
Source code
|
| reads |
Man page
|
| reads,savProject-method |
Man page
|
| run |
Man page
|
| run,savProject-method |
Man page
|
| savCorrectedIntensityFormat-class |
Man page
|
| savData-class |
Man page
|
| savErrorFormat-class |
Man page
|
| savExtractionFormat-class |
Man page
|
| savFormat-class |
Man page
|
| savProject-class |
Man page
|
| savQualityFormat-class |
Man page
|
| savQualityFormatV5-class |
Man page
|
| savR |
Man page
|
| savR,character-method |
Man page
|
| savR,missing-method |
Man page
|
| savR-package |
Man page
|
| savTileFormat-class |
Man page
|
| subsetSide |
Source code
|
| testVersion |
Source code
|
| tileMetrics |
Man page
|
| tileMetrics,savProject-method |
Man page
|
